Bolsonaro has been arrested after authorities concluded he posed a serious risk of fleeing while under domestic detention.
The one-time leader was convicted of planning a armed takeover in the ninth month and given more than over two decades in prison, but he was staying under confinement pending legal challenges.
Top Judicial Official Justice Moraes said the action to imprison the elderly politician was a precautionary step after fresh information came to light.
This encompassed seeking to disable his electronic bracelet and a invitation to a demonstration that could "allow for a potential flight.
In a document approving the detention, the judge said intelligence from the centre monitoring the former president's confinement suggested the former leader's "intention to break the electronic ankle bracelet to secure accomplishment in his flight.
This, it said, would be assisted by the disorder caused by the gathering called by his child.
His offspring, Flávio, who holds office as a congressional representative, called for a gathering of his supporters near his father's house to take place on Saturday evening.
Flávio Bolsonaro wrote on online platforms on last Friday: Do you plan to struggle for your nation, or watch it all from your phone there on your sofa? I call on you to battle with us."
He said the gathering would be so supporters could seek divine intervention for his physical condition and for the restoration of democratic rule in our land."
Part of the magistrate's determination was the chance of his "relocation to foreign missions near the residence, considering that the inquiries revealed a history of organizing to seek refuge through a consular facility", a declaration said.
The judicial paperwork highlights that the US embassy in the federal district, Brasilia, is located around approximately 13 kilometers from the former president's residence.
Bolsonaro's legal woes have generated frustration from fellow conservative nationalist US President President Trump, leading him to implement a fifty percent tax on imports of Brazilian goods.
The former president is being kept in a Federal Police station in Brazil's capital city and will experience a custody hearing on the next day.
It was only on the previous day that the ex-leader's attorneys asked the Supreme Court to permit him to serve his whole jail sentence under home confinement, with electronic monitoring.
They also petitioned that Bolsonaro be allowed to depart his residence for medical care, saying he demanded frequent medical attention for lung conditions and other illnesses.
He was determined responsible of orchestrating a scheme aimed at keeping him in power after he lost the national vote to his ideological adversary, Luiz Inácio Lula da Silva.
Top judicial officials said that he knew of a scheme which included plans to assassinate Lula and his vice-presidential running mate, his vice-presidential candidate, and to imprison and murder the presiding judge - the Supreme Court justice who has been presiding over his judicial proceedings.
The plot was prevented because it didn't receive the support of the military leaders. His successor was sworn in without issue on the first day of 2023.
But a week later, on the eighth of January, many his followers stormed and vandalised government buildings in the federal district, the capital city.
The law enforcement took action and around approximately 1,500 persons were detained.
The magistrates found that the protesters had been encouraged by the former president whose plan, they said, was for the national armed forces to take action, restore order and return him to office.
At the period, Bolsonaro's lawyers called the 27 years and three months sentence "absurdly excessive.
He was also prohibited from seeking elected position until twenty-sixty - eight years after the completion of his term.
The ex-leader called the legal proceedings a political persecution and said it was aimed at blocking him competing in the 2026 presidential election.
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